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  • Apollo Genome Annotation Curation Tool
    "Apollo is a genome annotation viewer and editor. It was developed as a collaboration between the Berkeley Drosophila Genome Project (part of the FlyBase consortium) and The Sanger Institute in Cambridge, UK. Apollo allows researchers to explore genomic annotations at many levels of detail, and to perform expert annotation curation, all in a graphical environment. It was used by the FlyBase biologists to construct the Release 3 annotations on the finished Drosophila melanogaster genome, and is also a primary vehicle for sharing these annotations with the community. The Generic Model Organism Database (GMOD) project, which aims to provide a complete ready-to-use toolkit for analyzing whole genomes, has adopted Apollo as its annotation workbench. Apollo is...
    in Public bookmarks with browser genomics nihlbio visualization
  • Artemis: DNA Sequence Viewer and Annotation Tool - Wellcome Trust ...
    "Artemis is a free genome viewer and annotation tool that allows visualisation of sequence features and the results of analyses within the context of the sequence, and also its six-frame translation. "
    in Public bookmarks with browser genomics nihlbio visualization
  • Dotter
    "Dotter is a graphical dotplot program for detailed comparison of two sequences. Here, every residue in one sequence is compared to every residue in the other sequence. The first sequence runs along the x-axis and the second sequence along the y-axis. In regions where the two sequences are similar to each other, a row of high scores will run diagonally across the dot matrix. If you're comparing a sequence against itself to find internal repeats, you'll notice that the main diagonal scores maximally, since it's the 100% perfect self-match."
    in Public bookmarks with bioinformatics nihlbio sequenceanalysis visualization
  • NCI Bioinformatics Community Resource
    "The NCI Bioinformatics Community Resource (NBCR) is a repository of links to a variety of bioinformatics tools useful in the analysis of DNA and Protein sequence data. The repository is organized to allow users to provide input on the value of the listed sites and to easily suggest sites which should be added to the repository. "
    in Public bookmarks with bioinformatics nih nihlbio reference

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