• Java(TM) Boutique - Tutorial - Inversion of Control: A Mechanism for Highly Flexible Applications
  with java reference
• Javascript Working with Windows: Referencing the Opener
  window.open
  with javascript programming webdev
• Javolution
  
  Java library for real-Time, embedded and high-performance applications.
  cldc critical embedded fast free j2me java library open-source parser real-time safety sax2 xml
  with java opensource performance programming by 4 users
• JBrowse - GMOD
  "JBrowse is a genome browser with an AJAX-based interface. JBrowse renders most tracks using client side JavaScript and JSON as its data transfer format. JBrowse is currently under development by the Ian Holmes Lab at UC Berkeley. It is expected to have a production release in 2009. Most development has been done by Mitch Skinner. JBrowse was formerly known as GBrowse 3. However, this name was changed to JBrowse to avoid confusion: JBrowse is an alternative to GBrowse, not a successor."
  with visualization
• Jeff Jonas
  with datamining privacy
• Jeteye Jetpaks - Better Bookmarks
  Public, private, shared
  with social web by 4 users
• JExcelApi
  with excel java by 2 users
• JFreeChart Class Library (version 1.0.0-rc1)
  with graphics java programming
• John Wilbur's Research Group
  with informationretrieval language ncbi nih statistics
• John Wooley | CAMERA
  with biography genomics
• Journal / Author Name Estimator
  "Have you recently written a paper, but you're not sure to which journal you should submit it? Or maybe you want to find relevant articles to cite in your paper? Or are you an editor, and do you need to find reviewers for a particular paper? Jane can help!"
  with journal publishing writing
• Journal / Author Name Estimator
  "Jane will then compare your document to millions of documents in Medline to find the best matching journals or authors."
  with bioinformatics by 3 users
• Journal of Combinatorial Optimization, Volume 13
  Number 3 is a bioinformatics issue.
  with bioinformatics todo
• JScience
  
  The most comprehensive Java library for the scientific community.
  java library module open-source plugin science sciences scientific
  with algorithms java opensource programming science by 2 users
• JSim
  "JSim is a Java-based simulation system for building quantitive numeric models and analyzing them with respect to experimental reference data."
  with freeware systemsbiology
• JUNG - Java Universal Network/Graph Framework
  "JUNG — the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network."
  General framework for the modeling, analysis, and visualization of graphs
  graph jung visualization
  with graph graphics java network visualization by 2 users
• KaryotypeDB
  "The Karyotype database (KaryotypeDB) contains karyotype and chromosome information."
  with genetics karyotype ndar
• KEGG API reference manual
  Kyoto Encyclopedia of Genes and Genomes Web Service
  with bioinformatics soap webservices wsdl
• KEGG: Kyoto Encyclopedia of Genes and Genomes
  Developing a "computer representation of the cell, the organism, and the biosphere, which will enable computational prediction of higher-level complexity of cellular processes and organism behaviors from genomic and molecular information"
  with bioinformatics systemsbiology
• Kingsley Lab Home Page
  "We are using modern genetic and genomic methods to identify the molecular mechanisms that create, pattern, and repair skeletal tissues. "
  with evolution genetics genomics

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