• Biogateway Overview
  "The Biogateway is an integrated systems offering an interface, via SPARQL, to the entire set of the OBO foundry candidate ontologies, the whole set of GOA files, SwissProt, the NCBI taxonomy as well as in-house ontologies."
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• Charles DeLisi - Wikipedia, the free encyclopedia
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• Cytoscape: Analyzing and Visualizing Biological Network Data
  "Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. "
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• DIP:Home
  "The DIPTM database catalogs experimentally determined interactions between proteins."
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• Gaggle
  This software aims to provide a platform for integrating data sources and analysis software important to systems biology.
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• IPA Certification Program
  "The IPA Certification Program is a free online course offered by Ingenuity Systems for customers who want an in-depth understanding of IPA. This structured curriculum provides comprehensive training in IPA and includes a certification exam. After successfully completing the course and exam, the student receives official certification as an IPA Certified Analyst."
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• JSim
  "JSim is a Java-based simulation system for building quantitive numeric models and analyzing them with respect to experimental reference data."
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• KEGG: Kyoto Encyclopedia of Genes and Genomes
  Developing a "computer representation of the cell, the organism, and the biosphere, which will enable computational prediction of higher-level complexity of cellular processes and organism behaviors from genomic and molecular information"
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• The BioGRID | Search for Interactions
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• WikiPathways - WikiPathways
  "In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community."
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