- 5AM | Solutions MEM Solution Description
"The Microarray Enterprise Manager (MEM), a novel web-based information management solution for Microarray Core Service Providers and the scientists they serve, was created in collaboration with leading scientists from the Translational Genomics Research
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- affxparser
This is a BioConductor "package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR)".
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- Affymetrix - Affymetrix Power Tools
"The Affymetrix Power Tools (APT) contains C++ source code for analyzing Affymetrix data and a set of command line tools built on this source code."
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- Affymetrix - Affymetrix Power Tools
"Affymetrix Power Tools (APT) are a set of cross-platform command line programs that implement algorithms for analyzing and working with Affymetrix GeneChip® arrays. APT is an open-source project licensed under the GNU General Public License (GPL)."
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- Affymetrix - Annotation files
all in one page
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- Affymetrix - DevNet Tools
"gtype_cel_to_pq tool extracts probesets from genotyping CEL filess into tab-delimited text suitable for import into other tools such as R."
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- Affymetrix - Educator Resources - Microarray Animations and PowerPoints 2005
"This section contains two current animations detailing Microarray funtions as well as other PowerPoint resources to use within the various modules."
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- Affymetrix - Educator Resources, Links
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- Affymetrix - Event Archive
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- Affymetrix - Fusion SDK
"The fusion software developers kit contains tool to parse Affymetrix data files generated by the MAS/GCOS system as well as the future Affymetrix GeneChip Command Console (project name "Calvin"), Expression Console and Genotyping Console software."
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- Affymetrix - GeneChip® Command Console™ Beta Software Download (AGCC)
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- Affymetrix - Sample Data, Gene 1.0 ST Array Data Set
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- Affymetrix Power Tools: MANUAL: apt-cel-convert (apt-1.10.2)
"apt-cel-convert - program to convert cel files to different types."
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- annotare
MAGE-TAB creation tool
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- arrayQCplot
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- biogem
"The Biomedical Genomics Microarray (BIOGEM) laboratory is a genomics facility located in the Department of Medicine at UCSD. (BIOGEM) was established in 2000 to provide spotted cDNA microarray technology to the UCSD research community."
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- Bioinformatics Graz
Genesis Clustering Software
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- BioWarehouse
"BioWarehouse is an open-source software environment for integrating a set of biological databases into a single physical database management system for data management, mining, and exploration."
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- CaArray - Molecular WIKI
"caArray is an open-source, web and programmatically accessible array data management system. caArray guides the annotation and exchange of array data using a federated model of local installations whose results are shareable across the cancer Biomedical Informatics Grid (caBIG™)."
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- caArray MAGE-ML Loader (caAMEL) Project Portal
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microarray from all users