• APBS: Adaptive Poisson-Boltzmann Solver
  
  apbs biomolecular continuum differen differential electrostatics element equation finite nanoscale poisson-boltzmann simulation
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• DelPhi
  DelPhi provides numerical solutions to the Poisson-Boltzmann equation (both linear and nonlinear form) for molecules of arbitrary shape and charge distribution. The current version is fast (the best relaxation parameter is estimated at run time), accurate
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• PDB2PQR
  Poisson-Boltzmann electrostatics calculations
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