• Albany Molecular Research, Inc.
  
  Albany Molecular Research, Inc. is a global chemistry-based drug discovery, development and manufacturing company focused on small molecule prescription drugs.
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• Algorithms for Molecular Biology | Home page
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• Apple
  Science - Science Solutions - Advanced 3D Molecular Visualization
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• BioLeap
  Predicting Molecular Performance with Leading Edge Computational Fragment-based Design
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• Computational Chemistry
  Molecular Recognition Section : NIDDK
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• Dalton Quantum Chemistry Program
  Dalton is a powerful molecular electronic structure program, with an extensive functional for the calculation of molecular properties at the HF, DFT, MCSCF, and CC levels of theory.
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• DOT - a software package for examining molecular interactions
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• G Protein-Coupled Receptors
  Molecular Recognition Section : NIDDK
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• GAMESS
  The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package. GAMESS is maintained by the members of the Gordon research group at Iowa State University.
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• GROMACS
  The World's Fastest Molecular Dynamics - and it's GPL!
  GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
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• Institute for Molecular Manufacturing
  
  website of the non-profit Institute for Molecular Manufacturing
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• JME Molecular Editor Applet
  
  JME Molecule Editor applet allows creation and editing of molecules and generates SMILES.
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• Journal of Computer-Aided Molecular Design
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• MMTK - The Molecular Modelling Toolkit
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• MOLDEN a visualization program of molecular and electronic structure
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• Molecular Biology Databases at NIH
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• Molecular Libraries and Imaging
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• NAMD - Scalable Molecular Dynamics
  
  NAMD is a parallel molecular dynamics code for large biomolecular systems. NAMD is free with source code.
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• NIH Center for Molecular Modeling
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• Pedro's BioMolecular Research Tools
  A Collection of WWW Links to Information and Services Useful to Molecular Biologists
  in Public bookmarks with collection information services molecular biologists by 2 users

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