• Chilibot
  finding gene and protein relationships from MEDLINE - a text mining approach
  Chilibot uses NLP techniques to extract and visualize gene, protein and drug interactions from MEDLINE abstracts. This is useful for microarray and proteomics data analysis
  gene medline mining protein relationship text
  in Bookmarks Toolbar Folder > Pathways with pathways finding gene protein relationships medline text mining
• Gene Set Enrichment Analysis - Broad
  
  Gene Set Enrichment Analysis software and documentation from the Broad Institute
  analysis and bioinformatics broad cancer comput enrichment gene gsea harvard institute microarray mit molecular sets signature
  in Bookmarks Toolbar Folder > Data_Vis with data_vis gene enrichment analysis broad
• ModuleFinder and CoReg
  alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants
  in Bookmarks Toolbar Folder > Data_Vis with data_vis alternative tools linking gene expression modules promoter

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