http://netvouz.com/tag/alignment?feed=rss Bookmarks tagged with "alignment" on Netvouz https://wikis.utexas.edu/display/GSAF/Software#Software-map Genome Sequencing and Analysis Facility User Support Wiki - UT Austin Wikis Work aunderwo Wed, 02 Nov 2011 11:40:04 GMT http://code.google.com/p/forester/wiki/PhyloBioRuby #!/usr/bin/env ruby require 'bio' # Reads in a ClustalW-formatted multiple sequence alignment # from a file named "infile_clustalw.aln" and stores it in 'report'. report = Bio::ClustalW::Report.new(File.read('infile_clustalw.aln')) # Accesses the actual alignment. msa = report.alignment # Goes through all sequences in 'msa' and prints the # actual molecular sequence. msa.each do |entry|   puts entry.seq end aunderwo Fri, 18 Mar 2011 09:35:43 GMT http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol#Perform_alignment SAM protocol - samtools Work aunderwo Wed, 09 Mar 2011 13:11:48 GMT http://www.geneious.com/sequence/alignment Sequence alignment, sequence analysis, BLAST and more solimo Sun, 19 Nov 2006 10:12:22 GMT http://cl.sdsc.edu/ce.html Databases and Tools for 3-D Protein Structure Comparison and Alignment Using the Combinatorial Extension (CE) Method solimo Fri, 03 Nov 2006 21:24:16 GMT http://pfaat.sourceforge.net/ Protein Family Alignment Annotation Tool editor viewer solimo Tue, 19 Sep 2006 05:06:23 GMT http://www.geneious.com/?gclid=CLuXxIaExoYCFSiqWAodBGYipA Sequence alignment, sequence analysis, BLAST and more abhishek_twr Fri, 04 Aug 2006 12:28:25 GMT http://bioinformatics.albany.edu/~cemc/ Multiple Protein Structure Alignment Server solimo Wed, 22 Feb 2006 22:07:29 GMT http://cl.sdsc.edu/ Databases and Tools for 3-D Protein Structure Comparison and Alignment Using the Combinatorial Extension (CE) Method solimo Wed, 22 Feb 2006 22:04:32 GMT http://www.cs.ucdavis.edu/~gusfield/xparall/index.html Parametric Sequence Alignment Algorithms > String Algorithms mcswell Mon, 20 Feb 2006 15:02:52 GMT