http://netvouz.com/bioinformatics/tag/visualization?feed=rss bioinformatics's bookmarks tagged "visualization" on Netvouz http://www.annoj.org/ "Anno-J is a Web 2.0 application designed for visualizing deep sequencing data and other genome annotation data. It is intended to run in modern W3C compliant browsers*, and allows flexible configuration of plugins and data streams from providers located anywhere on the internet." bioinformatics Wed, 10 Mar 2010 17:05:48 GMT http://apollo.berkeleybop.org/current/index.html "Apollo is a genome annotation viewer and editor. It was developed as a collaboration between the Berkeley Drosophila Genome Project (part of the FlyBase consortium) and The Sanger Institute in Cambridge, UK. Apollo allows researchers to explore genomic annotations at many levels of detail, and to perform expert annotation curation, all in a graphical environment. It was used by the FlyBase biologists to construct the Release 3 annotations on the finished Drosophila melanogaster genome, and is also a primary vehicle for sharing these annotations with the community. The Generic Model Organism Database (GMOD) project, which aims to provide a complete ready-to-use toolkit for analyzing whole genomes, has adopted Apollo as its annotation workbench. Apollo is... bioinformatics Wed, 08 Sep 2010 13:43:25 GMT http://www.sanger.ac.uk/resources/software/artemis/ "Artemis is a free genome viewer and annotation tool that allows visualisation of sequence features and the results of analyses within the context of the sequence, and also its six-frame translation. " bioinformatics Wed, 08 Sep 2010 13:38:31 GMT https://cgwb.nci.nih.gov/ bioinformatics Wed, 14 Jan 2009 19:35:15 GMT http://mkweb.bcgsc.ca/circos/ "Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions." bioinformatics Fri, 17 Sep 2010 14:37:14 GMT http://www.gmod.org/wiki/index.php/CMap "CMap is a web-based tool that allows users to view comparisons of genetic and physical maps." bioinformatics Fri, 17 Aug 2007 15:13:15 GMT http://www.thechiselgroup.com/diamond "In the DIaMOND (Degree of Interest Modelling for Ontology Navigation and Development) project we are investigating the application of principles of attention-reactive interfaces to provide adaptive visualizations of the underlying ontology." bioinformatics Thu, 14 Aug 2008 19:49:35 GMT http://sonnhammer.sbc.su.se/Dotter.html "Dotter is a graphical dotplot program for detailed comparison of two sequences. Here, every residue in one sequence is compared to every residue in the other sequence. The first sequence runs along the x-axis and the second sequence along the y-axis. In regions where the two sequences are similar to each other, a row of high scores will run diagonally across the dot matrix. If you're comparing a sequence against itself to find internal repeats, you'll notice that the main diagonal scores maximally, since it's the 100% perfect self-match." bioinformatics Wed, 08 Sep 2010 15:38:30 GMT http://polaris.imt.uwm.edu:7777/fisheye/ bioinformatics Mon, 04 Dec 2006 21:41:01 GMT http://www.flintbox.com/technology.asp?Page=3716 "A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes" bioinformatics Wed, 22 Oct 2008 17:31:16 GMT