- Center for the Development of a Virtual Tumor
"CViT’s long term goal is to develop a generic, module-based tool-kit for modeling and simulating selected cancer types of interest such as breast, brain cancer, and melanoma following a paradigm-shifting cross-disciplinary complex systems approach."
in Public bookmarks with bioinformatics cancer research
- CGEMS About Page
in Public bookmarks with bioinformatics cancer genetics ndar snp
- CGL Home Page
Comparative Genomics Library
in Public bookmarks with bioinformatics genomics opensource perl
- Chemical Effects in Biological Systems
"Welcome to the National Institute of Environmental Health Sciences (NIEHS) Chemical Effects in Biological Systems (CEBS) knowledgebase."
in Public bookmarks with bioinformatics miame microarray nih
- Cinteny - Server for Synteny and Genome Rearrangement Analysis
"Cinteny server can be used for finding regions syntenic across multiple genomes and measuring the extent of genome rearrangement using reversal distance as a measure."
in Public bookmarks with bioinformatics genomics
- CMA Portal
The Cancer Genome Atlas (TCGA) data will be accessed through this portal.
in Public bookmarks with bioinformatics genomics nih
- connectivity map
"The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease"
in Public bookmarks with bioinformatics chemoinformatics geneexpression microarray
- Contact - Stanford Medical Informatics - Stanford University School of Medicine
in Public bookmarks with bioinformatics
- Copy Number Variation Project
"Genetic diseases are caused by a variety of different possible alterations (mutations) in DNA sequences. We are investigating gains and losses of large chunks of DNA sequence consisting of between ten thousand and five million letters (known as Copy Numb
in Public bookmarks with bioinformatics genomics
- CRAN Task View: Statistical Genetics
"The focus in this task view is on R packages implementing statistical methods and algorithms for the analysis of genetic data and for related population genetics studies."
in Public bookmarks with bioconductor bioinformatics genetics r
- Current Protocols in Bioinformatics : Wiley InterScience
in Public bookmarks with bioinformatics
- Cytoscape: Analyzing and Visualizing Biological Network Data
"Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. "
in Public bookmarks with bioinformatics systemsbiology by 2 users
- D3: Computational Biology & Applied Algorithmics: Software: FunSimMat
"FunSimMat is a comprehensive resource of semantic and functional similarity values. It allows searching for functional similarity values for proteins (extracted from UniProt), and protein families (Pfam, SMART). FunSimMat provides several different semantic and functional similarity measures for each protein pair using the Gene Ontology annotation from UniProtKB. "
in Public bookmarks with bioinformatics biologicalfunction ontology
- Database of Genomic Variants
"A curated catalogue of structural variation in the human genome"
in Public bookmarks with bioinformatics database genomics
- Deploying caGrid Track - CaGrid
"This is a user track presenting comprehensive information for cancer centers and others deploying a functional caGrid node."
in Public bookmarks with bioinformatics cabig grid semantic
- DIP:Home
"The DIPTM database catalogs experimentally determined interactions between proteins."
in Public bookmarks with bioinformatics systemsbiology
- DiRE :: identification of DIstant Regulatory Elements of co-regulated genes
"We developed a web server called DiRE, from Distant Regulatory Elements, based on the Enhancer Identification (EI) method, to determine the chromosomal location and functional characteristics of distant REs in higher eukaryotic genomes."
in Public bookmarks with bioinformatics geneexpression generegulation genetics genomics
- DOGS - Database Of Genome Sizes
in Public bookmarks with bioinformatics database genomics
- Dotter
"Dotter is a graphical dotplot program for detailed comparison of two sequences. Here, every residue in one sequence is compared to every residue in the other sequence. The first sequence runs along the x-axis and the second sequence along the y-axis. In regions where the two sequences are similar to each other, a row of high scores will run diagonally across the dot matrix. If you're comparing a sequence against itself to find internal repeats, you'll notice that the main diagonal scores maximally, since it's the 100% perfect self-match."
in Public bookmarks with bioinformatics nihlbio sequenceanalysis visualization
- DRAWTREE and DRAWGRAM
"DRAWTREE and DRAWGRAM are interactive tree-plotting programs that take a tree description in a file and read it, and then let you interactively make various settings and then plot the tree on a laser printer, plotter, or dot matrix printer."
in Public bookmarks with bioinformatics graphics
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